Gene expression analysis of M. tuberculosis in patients with and without HIV co-infection

Group 3: Anne Skov-Johannessen s184330, Dea F. Skipper, Helene B. L. Petersen s194699, Johanne B. Overgaard s194691 and Rebecca C. Grenov

Introduction

Co-infection with tuberculosis (TB) is the leading cause of death in HIV-infected individuals.

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Introduction

Purpose of data collection Data origin Data handling Remove irrelevant variables Change ugly variables Handle replications

Methods

Discriptive analysis

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Methods

Normalization Log2

Methods

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## Methods Normalization Log2

Methods

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Analysis PCA Linear regression

Results

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PCA

Results

Results

Linear regression Forest plot

Results

Volcano plot

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PCA

Results

Linear regression Forest plot

Results

Volcano plot

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Discussion

Compare significant genes with the genes found in the article